PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn297951
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 189aa    MW: 20709 Da    PI: 4.3924
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn297951genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.65.8e-4031123799
      DUF260   7 vlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+ssl+yeAear+rdPvyG+vg i+ lq+q+e+l++el+++++
  Achn297951  31 FLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVSSLAYEAEARVRDPVYGCVGAITFLQRQVERLQKELDSANS 123
                 89**************************************************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.69724125IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3831122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSADGDDTGV SDDDDTGFTA FIGENGADEE FLRRKCMPGC IFAPYFPPEE PQKFANVHKI  60
FGASNVTKLL NELLPHQRED AVSSLAYEAE ARVRDPVYGC VGAITFLQRQ VERLQKELDS  120
ANSDLIRYAC NDIQSSLPAP PGVNLVHPTV PTRQRHEGEI FYQTPSSFQF PYSPLPWNES  180
PSGGGGNI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476856.15e-81PREDICTED: protein LATERAL ORGAN BOUNDARIES
RefseqXP_006476857.15e-81PREDICTED: protein LATERAL ORGAN BOUNDARIES
RefseqXP_006476858.15e-81PREDICTED: protein LATERAL ORGAN BOUNDARIES
RefseqXP_015385245.15e-81PREDICTED: protein LATERAL ORGAN BOUNDARIES
SwissprotQ9FML42e-64LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A067G1Z52e-80A0A067G1Z5_CITSI; Uncharacterized protein
STRINGPOPTR_0015s09370.13e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.41e-65LBD family protein